Index

C

count() (in module perseuspy.dependent_peptides)

create_column_index() (in module perseuspy.io.perseus.matrix)

D

doubleParam() (in module perseuspy.parameters)

F

fileParam() (in module perseuspy.parameters)

from_perseus() (in module perseuspy.io.perseus.network)

I

intParam() (in module perseuspy.parameters)

M

multiChoiceParam() (in module perseuspy.parameters)

P

parse_parameters() (in module perseuspy.parameters) PathOrFile (class in perseuspy.io.perseus.matrix) perseuspy (module) perseuspy.dependent_peptides (module) perseuspy.io (module)

perseuspy.io.maxquant (module) perseuspy.io.perseus (module) perseuspy.io.perseus.matrix (module) perseuspy.io.perseus.network (module) perseuspy.parameters (module)

R

read_annotations() (in module perseuspy.io.perseus.matrix) read_dependent_peptides() (in module perseuspy.dependent_peptides) read_networks() (in module perseuspy.io.perseus.network)

read_perseus() (in module perseuspy.io.perseus.matrix) read_rawFilesTable() (in module perseuspy.io.maxquant) run_dependent_peptides() (in module perseuspy.dependent_peptides) run_dependent_peptides_from_parameters() (in module perseuspy.dependent_peptides)

S

singleChoiceParam() (in module perseuspy.parameters)

stringParam() (in module perseuspy.parameters)

T

to_perseus() (in module perseuspy.io.perseus.matrix) (in module perseuspy.io.perseus.network)

W

write_networks() (in module perseuspy.io.perseus.network)